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cellsium package
cellsium
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H
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I
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J
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M
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R
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U
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V
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W
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Y
A
add() (cellsium.simulation.BaseSimulator method)
(cellsium.simulation.placement.Box2D method)
(cellsium.simulation.placement.Chipmunk method)
(cellsium.simulation.placement.pybox2d.Box2D method)
(cellsium.simulation.placement.pymunk.Chipmunk method)
(cellsium.simulation.simulator.Simulator method)
(cellsium.simulation.simulator.World method)
add_boundaries_from_dxf() (in module cellsium.cli.simulate)
add_boundaries_from_tunables() (in module cellsium.cli.simulate)
add_boundary() (cellsium.simulation.BaseSimulator method)
(cellsium.simulation.placement.Box2D method)
(cellsium.simulation.placement.Chipmunk method)
(cellsium.simulation.placement.pybox2d.Box2D method)
(cellsium.simulation.placement.pymunk.Chipmunk method)
(cellsium.simulation.simulator.Simulator method)
(cellsium.simulation.simulator.World method)
add_empty_third_dimension() (in module cellsium.geometry)
add_output_prefix() (in module cellsium.cli)
all_random_sequences_generated_for (cellsium.model.agent.WithRandomSequences attribute)
(cellsium.model.WithRandomSequences attribute)
AnyFunction (class in cellsium.typing)
assemble_cell() (in module cellsium.model)
AutoMesh3D (class in cellsium.model)
(class in cellsium.model.geometry)
available_rngs() (cellsium.random.RandomNumberGenerator class method)
B
BaseSimulator (class in cellsium.simulation)
bend() (cellsium.model.BentRod method)
(cellsium.model.geometry.BentRod method)
BentRod (class in cellsium.model)
(class in cellsium.model.geometry)
birth() (cellsium.model.SimulatedCell method)
(cellsium.model.SizerCell method)
(cellsium.model.TimerCell method)
BoundariesFile (class in cellsium.cli.simulate)
BoundariesScaleFactor (class in cellsium.cli.simulate)
Box2D (class in cellsium.simulation.placement)
(class in cellsium.simulation.placement.pybox2d)
C
Calibration (class in cellsium.parameters)
Cell (in module cellsium.cli)
CellGeometry (class in cellsium.model)
(class in cellsium.model.geometry)
cellsium
module
cellsium.cli
module
cellsium.cli.cli
module
cellsium.cli.render
module
cellsium.cli.simulate
module
cellsium.cli.training
module
cellsium.geometry
module
cellsium.model
module
cellsium.model.agent
module
cellsium.model.geometry
module
cellsium.model.initialization
module
cellsium.output
module
cellsium.output.gt
module
cellsium.output.mesh
module
cellsium.output.plot
module
cellsium.output.render
module
cellsium.output.serialization
module
cellsium.output.svg
module
cellsium.output.xml
module
cellsium.parameters
module
cellsium.random
module
cellsium.simulation
module
cellsium.simulation.placement
module
cellsium.simulation.placement.base
module
cellsium.simulation.placement.pybox2d
module
cellsium.simulation.placement.pymunk
module
cellsium.simulation.simulator
module
cellsium.typing
module
chain() (cellsium.random.RRF class method)
channel (cellsium.output.render.FluorescenceRenderer attribute)
check_overwrite() (in module cellsium.output)
Chipmunk (class in cellsium.simulation.placement)
(class in cellsium.simulation.placement.pymunk)
ChipmunkPlacementRadius (class in cellsium.simulation.placement.pymunk)
circle_segment() (in module cellsium.geometry)
clear() (cellsium.simulation.BaseSimulator method)
(cellsium.simulation.placement.base.PhysicalPlacement method)
(cellsium.simulation.placement.Chipmunk method)
(cellsium.simulation.placement.pymunk.Chipmunk method)
(cellsium.simulation.simulator.Simulator method)
(cellsium.simulation.simulator.World method)
Coccoid (class in cellsium.model)
(class in cellsium.model.geometry)
COCOOutput (class in cellsium.output.gt)
commit() (cellsium.simulation.simulator.World method)
compose() (cellsium.random.RRF class method)
(in module cellsium.cli.simulate)
convergence_check_interval (cellsium.simulation.placement.Chipmunk attribute)
(cellsium.simulation.placement.pymunk.Chipmunk attribute)
convert() (cellsium.output.render.PlainRenderer static method)
copy() (cellsium.model.agent.Copyable method)
(cellsium.model.agent.WithLineage method)
(cellsium.model.Copyable method)
(cellsium.model.WithLineage method)
(cellsium.simulation.simulator.World method)
Copyable (class in cellsium.model)
(class in cellsium.model.agent)
create_uneven_illumination() (cellsium.output.render.UnevenIlluminationPhaseContrast method)
create_xml() (cellsium.output.svg.SvgRenderer static method)
CsvOutput (class in cellsium.output.serialization)
D
debug_output() (cellsium.output.render.PlainRenderer method)
default (cellsium.cli.simulate.BoundariesFile attribute)
(cellsium.cli.simulate.BoundariesScaleFactor attribute)
(cellsium.cli.simulate.SimulationDuration attribute)
(cellsium.cli.simulate.SimulationOutputFirstState attribute)
(cellsium.cli.simulate.SimulationOutputInterval attribute)
(cellsium.cli.simulate.SimulationTimestep attribute)
(cellsium.cli.training.TrainingCellCount attribute)
(cellsium.cli.training.TrainingDataCount attribute)
(cellsium.cli.training.TrainingImageHeight attribute)
(cellsium.cli.training.TrainingImageWidth attribute)
(cellsium.output.OutputIndividualFiles attribute)
(cellsium.output.OutputIndividualFilesWildcard attribute)
(cellsium.output.OutputIndividualFilesZeros attribute)
(cellsium.output.OutputReproducibleFiles attribute)
(cellsium.output.plot.MicrometerPerCm attribute)
(cellsium.output.render.RenderChannels attribute)
(cellsium.parameters.Calibration attribute)
(cellsium.parameters.Height attribute)
(cellsium.parameters.NewCellBendLowerLower attribute)
(cellsium.parameters.NewCellBendLowerUpper attribute)
(cellsium.parameters.NewCellBendOverallLower attribute)
(cellsium.parameters.NewCellBendOverallUpper attribute)
(cellsium.parameters.NewCellBendUpperLower attribute)
(cellsium.parameters.NewCellBendUpperUpper attribute)
(cellsium.parameters.NewCellCount attribute)
(cellsium.parameters.NewCellLength1Mean attribute)
(cellsium.parameters.NewCellLength1Std attribute)
(cellsium.parameters.NewCellLength2Mean attribute)
(cellsium.parameters.NewCellLength2Std attribute)
(cellsium.parameters.NewCellLengthAbsoluteMax attribute)
(cellsium.parameters.NewCellLengthAbsoluteMin attribute)
(cellsium.parameters.NewCellRadiusFromCenter attribute)
(cellsium.parameters.NewCellWidthAbsoluteMax attribute)
(cellsium.parameters.NewCellWidthAbsoluteMin attribute)
(cellsium.parameters.NewCellWidthMean attribute)
(cellsium.parameters.NewCellWidthStd attribute)
(cellsium.parameters.Width attribute)
(cellsium.random.RandomNumberGenerator attribute)
(cellsium.random.Seed attribute)
(cellsium.simulation.placement.base.PlacementSimulationSimplification attribute)
(cellsium.simulation.placement.pymunk.ChipmunkPlacementRadius attribute)
defaults() (cellsium.model.agent.WithLineage static method)
(cellsium.model.agent.WithLineageHistory static method)
(cellsium.model.agent.WithTemporalLineage static method)
(cellsium.model.BentRod static method)
(cellsium.model.Coccoid static method)
(cellsium.model.Ellipsoid static method)
(cellsium.model.geometry.BentRod static method)
(cellsium.model.geometry.Coccoid static method)
(cellsium.model.geometry.Ellipsoid static method)
(cellsium.model.geometry.Rectangle static method)
(cellsium.model.geometry.RodShaped static method)
(cellsium.model.geometry.Shape static method)
(cellsium.model.geometry.WithAngle static method)
(cellsium.model.geometry.WithFluorescence static method)
(cellsium.model.geometry.WithPosition static method)
(cellsium.model.Rectangle static method)
(cellsium.model.RodShaped static method)
(cellsium.model.Shape static method)
(cellsium.model.WithAngle static method)
(cellsium.model.WithFluorescence static method)
(cellsium.model.WithLineage static method)
(cellsium.model.WithLineageHistory static method)
(cellsium.model.WithPosition static method)
(cellsium.model.WithTemporalLineage static method)
display() (cellsium.output.mesh.MeshOutput method)
(cellsium.output.Output method)
(cellsium.output.plot.PlotRenderer method)
(cellsium.output.render.PlainRenderer method)
(cellsium.output.serialization.JsonPickleSerializer method)
(cellsium.output.svg.SvgRenderer method)
(cellsium.output.xml.TrackMateXML method)
divide() (cellsium.model.SimulatedCell method)
E
Ellipsoid (class in cellsium.model)
(class in cellsium.model.geometry)
enforce_bounds() (in module cellsium.random)
ensure_extension() (in module cellsium.output)
ensure_number() (in module cellsium.output)
ensure_path() (in module cellsium.output)
ensure_path_and_extension() (in module cellsium.output)
ensure_path_and_extension_and_number() (in module cellsium.output)
ensure_python() (in module cellsium.simulation.placement.base)
F
FluorescenceRenderer (class in cellsium.output.render)
G
generate_cell() (in module cellsium.model)
generate_cells_mask() (cellsium.output.gt.GenericMaskOutput static method)
generator (cellsium.random.RRF attribute)
GenericMaskOutput (class in cellsium.output.gt)
get() (cellsium.random.RandomNumberGenerator class method)
get_approximation_circles() (cellsium.model.BentRod method)
(cellsium.model.Coccoid method)
(cellsium.model.geometry.BentRod method)
(cellsium.model.geometry.Coccoid method)
(cellsium.model.geometry.Rectangle method)
(cellsium.model.geometry.RodShaped method)
(cellsium.model.geometry.Shape method)
(cellsium.model.Rectangle method)
(cellsium.model.RodShaped method)
(cellsium.model.Shape method)
get_canvas_points_for_cell() (in module cellsium.output.render)
get_division_positions() (cellsium.model.geometry.WithProperDivisionBehavior method)
(cellsium.model.WithProperDivisionBehavior method)
get_mapping() (cellsium.output.render.RenderChannels static method)
get_random_sequences() (cellsium.model.agent.WithRandomSequences class method)
(cellsium.model.WithRandomSequences class method)
grow() (cellsium.model.SimulatedCell method)
(cellsium.model.SizerCell method)
(cellsium.model.TimerCell method)
H
h_to_s() (in module cellsium.model)
(in module cellsium.parameters)
Height (class in cellsium.parameters)
hours (cellsium.model.Timestep property)
(cellsium.simulation.simulator.Timestep property)
I
id_counter (cellsium.model.agent.IdCounter attribute)
(cellsium.model.IdCounter attribute)
IdCounter (class in cellsium.model)
(class in cellsium.model.agent)
imwrite() (cellsium.output.gt.GenericMaskOutput static method)
(cellsium.output.render.PlainRenderer static method)
initialize_cells() (in module cellsium.cli)
initialize_output_times_from_tunables() (in module cellsium.cli.simulate)
initialize_simulator() (in module cellsium.cli)
InitializeWithParameters (class in cellsium.model)
(class in cellsium.model.agent)
inner_step() (cellsium.simulation.placement.Chipmunk method)
(cellsium.simulation.placement.pymunk.Chipmunk method)
instantiate() (cellsium.output.render.RenderChannels class method)
J
JsonPickleSerializer (class in cellsium.output.serialization)
K
KwargFunction (class in cellsium.typing)
L
line() (in module cellsium.geometry)
load_class_from_module() (in module cellsium.cli.cli)
look_back_threshold (cellsium.simulation.placement.Chipmunk attribute)
(cellsium.simulation.placement.pymunk.Chipmunk attribute)
M
main() (in module cellsium.cli.cli)
measure_duration() (in module cellsium.cli.simulate)
MeshOutput (class in cellsium.output.mesh)
MicrometerPerCm (class in cellsium.output.plot)
module
cellsium
cellsium.cli
cellsium.cli.cli
cellsium.cli.render
cellsium.cli.simulate
cellsium.cli.training
cellsium.geometry
cellsium.model
cellsium.model.agent
cellsium.model.geometry
cellsium.model.initialization
cellsium.output
cellsium.output.gt
cellsium.output.mesh
cellsium.output.plot
cellsium.output.render
cellsium.output.serialization
cellsium.output.svg
cellsium.output.xml
cellsium.parameters
cellsium.random
cellsium.simulation
cellsium.simulation.placement
cellsium.simulation.placement.base
cellsium.simulation.placement.pybox2d
cellsium.simulation.placement.pymunk
cellsium.simulation.simulator
cellsium.typing
N
new_canvas() (cellsium.output.render.PlainRenderer static method)
(in module cellsium.output.render)
new_uneven_illumination() (cellsium.output.render.UnevenIlluminationPhaseContrast method)
NewCellBendLowerLower (class in cellsium.parameters)
NewCellBendLowerUpper (class in cellsium.parameters)
NewCellBendOverallLower (class in cellsium.parameters)
NewCellBendOverallUpper (class in cellsium.parameters)
NewCellBendUpperLower (class in cellsium.parameters)
NewCellBendUpperUpper (class in cellsium.parameters)
NewCellCount (class in cellsium.parameters)
NewCellLength1Mean (class in cellsium.parameters)
NewCellLength1Std (class in cellsium.parameters)
NewCellLength2Mean (class in cellsium.parameters)
NewCellLength2Std (class in cellsium.parameters)
NewCellLengthAbsoluteMax (class in cellsium.parameters)
NewCellLengthAbsoluteMin (class in cellsium.parameters)
NewCellRadiusFromCenter (class in cellsium.parameters)
NewCellWidthAbsoluteMax (class in cellsium.parameters)
NewCellWidthAbsoluteMin (class in cellsium.parameters)
NewCellWidthMean (class in cellsium.parameters)
NewCellWidthStd (class in cellsium.parameters)
next_cell_id() (cellsium.model.agent.IdCounter class method)
(cellsium.model.agent.WithLineage method)
(cellsium.model.IdCounter class method)
(cellsium.model.WithLineage method)
NoisyUnevenIlluminationPhaseContrast (class in cellsium.output.render)
NoPlacement (class in cellsium.simulation.placement.base)
now() (cellsium.output.gt.COCOOutput static method)
O
Output (class in cellsium.output)
output() (cellsium.output.mesh.MeshOutput method)
(cellsium.output.Output method)
(cellsium.output.plot.PlotRenderer method)
(cellsium.output.render.FluorescenceRenderer method)
(cellsium.output.render.NoisyUnevenIlluminationPhaseContrast method)
(cellsium.output.render.PhaseContrastRenderer method)
(cellsium.output.render.PlainRenderer method)
(cellsium.output.render.TiffOutput method)
(cellsium.output.render.UnevenIlluminationPhaseContrast method)
(cellsium.output.serialization.CsvOutput method)
(cellsium.output.serialization.JsonPickleSerializer method)
(cellsium.output.serialization.QuickAndDirtyTableDumper method)
(cellsium.output.svg.SvgRenderer method)
(cellsium.output.xml.TrackMateXML method)
output_type (cellsium.output.render.TiffOutput attribute)
OutputIndividualFiles (class in cellsium.output)
OutputIndividualFilesWildcard (class in cellsium.output)
OutputIndividualFilesZeros (class in cellsium.output)
OutputReproducibleFiles (class in cellsium.output)
P
parabolic_deformation() (in module cellsium.geometry)
parse_arguments_and_init() (in module cellsium.cli.cli)
perform_outputs() (in module cellsium.cli.simulate)
perform_simulation() (in module cellsium.cli.simulate)
PhaseContrastRenderer (class in cellsium.output.render)
PhysicalPlacement (class in cellsium.simulation.placement.base)
pixel_to_um() (in module cellsium.parameters)
PlacedCell (class in cellsium.model)
PlacementSimulation (class in cellsium.simulation.placement)
(class in cellsium.simulation.placement.base)
PlacementSimulationSimplification (class in cellsium.simulation.placement.base)
PlainRenderer (class in cellsium.output.render)
PlotRenderer (class in cellsium.output.plot)
points3d_on_canvas() (cellsium.model.AutoMesh3D method)
(cellsium.model.geometry.AutoMesh3D method)
points_on_canvas() (cellsium.model.CellGeometry method)
(cellsium.model.geometry.CellGeometry method)
points_to_path() (cellsium.output.svg.SvgRenderer static method)
prepare_output_name() (in module cellsium.cli.simulate)
Q
QuickAndDirtyTableDumper (class in cellsium.output.serialization)
R
random (cellsium.model.agent.WithRandomSequences property)
(cellsium.model.WithRandomSequences property)
random_sequences() (cellsium.model.initialization.RandomAngle static method)
(cellsium.model.initialization.RandomBentRod static method)
(cellsium.model.initialization.RandomFluorescence static method)
(cellsium.model.initialization.RandomPosition static method)
(cellsium.model.initialization.RandomWidthLength static method)
(cellsium.model.SizerCell static method)
(cellsium.model.TimerCell static method)
RandomAngle (class in cellsium.model.initialization)
RandomBentRod (class in cellsium.model.initialization)
RandomFluorescence (class in cellsium.model.initialization)
RandomlyDistributed (class in cellsium.parameters)
RandomNumberGenerator (class in cellsium.random)
RandomPosition (class in cellsium.model.initialization)
RandomWidthLength (class in cellsium.model.initialization)
raw_points() (cellsium.model.BentRod method)
(cellsium.model.Coccoid method)
(cellsium.model.Ellipsoid method)
(cellsium.model.geometry.BentRod method)
(cellsium.model.geometry.Coccoid method)
(cellsium.model.geometry.Ellipsoid method)
(cellsium.model.geometry.Rectangle method)
(cellsium.model.geometry.RodShaped method)
(cellsium.model.geometry.Shape method)
(cellsium.model.geometry.Square method)
(cellsium.model.Rectangle method)
(cellsium.model.RodShaped method)
(cellsium.model.Shape method)
(cellsium.model.Square method)
raw_points3d() (cellsium.model.AutoMesh3D method)
(cellsium.model.BentRod method)
(cellsium.model.geometry.AutoMesh3D method)
(cellsium.model.geometry.BentRod method)
(cellsium.model.geometry.Shape3D method)
(cellsium.model.Shape3D method)
Rectangle (class in cellsium.model)
(class in cellsium.model.geometry)
remove() (cellsium.simulation.BaseSimulator method)
(cellsium.simulation.placement.Box2D method)
(cellsium.simulation.placement.Chipmunk method)
(cellsium.simulation.placement.pybox2d.Box2D method)
(cellsium.simulation.placement.pymunk.Chipmunk method)
(cellsium.simulation.simulator.Simulator method)
(cellsium.simulation.simulator.World method)
render_cells() (cellsium.output.render.PlainRenderer static method)
RenderChannels (class in cellsium.output.render)
Representable (class in cellsium.model)
(class in cellsium.model.agent)
reset() (cellsium.model.agent.IdCounter class method)
(cellsium.model.IdCounter class method)
rod_raw_points() (cellsium.model.geometry.RodShaped method)
(cellsium.model.RodShaped method)
RodShaped (class in cellsium.model)
(class in cellsium.model.geometry)
rotate() (in module cellsium.geometry)
rotate3d() (in module cellsium.geometry)
rotate_and_mesh() (in module cellsium.geometry)
RRF (class in cellsium.random)
S
s_to_h() (in module cellsium.model)
(in module cellsium.parameters)
Seed (class in cellsium.random)
seed() (cellsium.random.RRF class method)
seed_sequence (cellsium.random.RRF attribute)
seed_value (cellsium.random.RRF attribute)
sequence (cellsium.random.RRF attribute)
Shape (class in cellsium.model)
(class in cellsium.model.geometry)
Shape3D (class in cellsium.model)
(class in cellsium.model.geometry)
shift() (in module cellsium.geometry)
SimulatedCell (class in cellsium.model)
simulation (cellsium.model.Timestep attribute)
(cellsium.simulation.simulator.Timestep attribute)
Simulation (class in cellsium.simulation.simulator)
SimulationDuration (class in cellsium.cli.simulate)
SimulationOutputFirstState (class in cellsium.cli.simulate)
SimulationOutputInterval (class in cellsium.cli.simulate)
SimulationTimestep (class in cellsium.cli.simulate)
simulator (cellsium.model.Timestep attribute)
(cellsium.simulation.simulator.Timestep attribute)
Simulator (class in cellsium.simulation.simulator)
SizerCell (class in cellsium.cli)
(class in cellsium.model)
spawn_generator() (cellsium.random.RRF class method)
Square (class in cellsium.model)
(class in cellsium.model.geometry)
step() (cellsium.model.SimulatedCell method)
(cellsium.simulation.BaseSimulator method)
(cellsium.simulation.placement.Box2D method)
(cellsium.simulation.placement.Chipmunk method)
(cellsium.simulation.placement.pybox2d.Box2D method)
(cellsium.simulation.placement.pymunk.Chipmunk method)
(cellsium.simulation.simulator.Simulator method)
subcommand_argparser() (in module cellsium.cli.render)
subcommand_main() (in module cellsium.cli.render)
(in module cellsium.cli.simulate)
(in module cellsium.cli.training)
SvgRenderer (class in cellsium.output.svg)
T
test() (cellsium.output.render.RenderChannels class method)
(cellsium.random.RandomNumberGenerator class method)
TiffOutput (class in cellsium.output.render)
time (cellsium.model.Timestep property)
(cellsium.simulation.simulator.Timestep property)
time_hours (cellsium.model.Timestep property)
(cellsium.simulation.simulator.Timestep property)
TimerCell (class in cellsium.cli)
(class in cellsium.model)
timestep (cellsium.model.Timestep attribute)
(cellsium.simulation.simulator.Timestep attribute)
Timestep (class in cellsium.model)
(class in cellsium.simulation.simulator)
TrackMateXML (class in cellsium.output.xml)
TrainingCellCount (class in cellsium.cli.training)
TrainingDataCount (class in cellsium.cli.training)
TrainingImageHeight (class in cellsium.cli.training)
TrainingImageWidth (class in cellsium.cli.training)
type_ (cellsium.random.RandomNumberGenerator attribute)
(cellsium.random.Seed attribute)
U
um_to_pixel() (in module cellsium.parameters)
UnevenIlluminationPhaseContrast (class in cellsium.output.render)
V
value (cellsium.cli.simulate.BoundariesFile attribute)
(cellsium.cli.simulate.BoundariesScaleFactor attribute)
(cellsium.cli.simulate.SimulationDuration attribute)
(cellsium.cli.simulate.SimulationOutputFirstState attribute)
(cellsium.cli.simulate.SimulationOutputInterval attribute)
(cellsium.cli.simulate.SimulationTimestep attribute)
(cellsium.cli.training.TrainingCellCount attribute)
(cellsium.cli.training.TrainingDataCount attribute)
(cellsium.cli.training.TrainingImageHeight attribute)
(cellsium.cli.training.TrainingImageWidth attribute)
(cellsium.output.OutputIndividualFiles attribute)
(cellsium.output.OutputIndividualFilesWildcard attribute)
(cellsium.output.OutputIndividualFilesZeros attribute)
(cellsium.output.OutputReproducibleFiles attribute)
(cellsium.output.plot.MicrometerPerCm attribute)
(cellsium.output.render.RenderChannels attribute)
(cellsium.parameters.Calibration attribute)
(cellsium.parameters.Height attribute)
(cellsium.parameters.NewCellBendLowerLower attribute)
(cellsium.parameters.NewCellBendLowerUpper attribute)
(cellsium.parameters.NewCellBendOverallLower attribute)
(cellsium.parameters.NewCellBendOverallUpper attribute)
(cellsium.parameters.NewCellBendUpperLower attribute)
(cellsium.parameters.NewCellBendUpperUpper attribute)
(cellsium.parameters.NewCellCount attribute)
(cellsium.parameters.NewCellLength1Mean attribute)
(cellsium.parameters.NewCellLength1Std attribute)
(cellsium.parameters.NewCellLength2Mean attribute)
(cellsium.parameters.NewCellLength2Std attribute)
(cellsium.parameters.NewCellLengthAbsoluteMax attribute)
(cellsium.parameters.NewCellLengthAbsoluteMin attribute)
(cellsium.parameters.NewCellRadiusFromCenter attribute)
(cellsium.parameters.NewCellWidthAbsoluteMax attribute)
(cellsium.parameters.NewCellWidthAbsoluteMin attribute)
(cellsium.parameters.NewCellWidthMean attribute)
(cellsium.parameters.NewCellWidthStd attribute)
(cellsium.parameters.Width attribute)
(cellsium.random.RandomNumberGenerator attribute)
(cellsium.random.Seed attribute)
(cellsium.simulation.placement.base.PlacementSimulationSimplification attribute)
(cellsium.simulation.placement.pymunk.ChipmunkPlacementRadius attribute)
verbose (cellsium.simulation.placement.Box2D attribute)
(cellsium.simulation.placement.Chipmunk attribute)
(cellsium.simulation.placement.pybox2d.Box2D attribute)
(cellsium.simulation.placement.pymunk.Chipmunk attribute)
W
Width (class in cellsium.parameters)
WithAngle (class in cellsium.model)
(class in cellsium.model.geometry)
WithFluorescence (class in cellsium.model)
(class in cellsium.model.geometry)
WithLineage (class in cellsium.model)
(class in cellsium.model.agent)
WithLineageHistory (class in cellsium.model)
(class in cellsium.model.agent)
WithPosition (class in cellsium.model)
(class in cellsium.model.geometry)
WithProperDivisionBehavior (class in cellsium.model)
(class in cellsium.model.geometry)
WithRandomSequences (class in cellsium.model)
(class in cellsium.model.agent)
WithTemporalLineage (class in cellsium.model)
(class in cellsium.model.agent)
world (cellsium.model.Timestep property)
(cellsium.simulation.simulator.Timestep property)
World (class in cellsium.simulation.simulator)
wrap() (cellsium.random.RRF class method)
write() (cellsium.output.mesh.MeshOutput method)
(cellsium.output.Output method)
(cellsium.output.plot.PlotRenderer method)
(cellsium.output.render.PlainRenderer method)
(cellsium.output.render.TiffOutput method)
(cellsium.output.serialization.CsvOutput method)
(cellsium.output.serialization.JsonPickleSerializer method)
(cellsium.output.serialization.QuickAndDirtyTableDumper method)
(cellsium.output.svg.SvgRenderer method)
(cellsium.output.xml.TrackMateXML method)
write_debug_output (cellsium.output.render.PlainRenderer attribute)
Y
YOLOOutput (class in cellsium.output.gt)
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